UNIVERSITY OF CALIFORNIA, SAN DIEGO
This application is submitted by a group of investigators at 9 sites distributed throughout the U.S. where there are active developmental research programs involving substantial numbers of typically developing children, and neuroimaging investigators with experience in multi-site imaging initiatives. We propose to join forces to leverage these ongoing pediatric studies to assemble, over a period of 2 years, a large, cross- sectional imaging-genomics dataset to be used as a shared resource. The major aim of our proposal is to create a database that will include genome-wide association results for a large number of neural architectural phenotypes obtained using multimodal structural imaging. We propose to offer this database - essentially a map depicting the genomic landscape of the developing human brain - as a resource to the scientific community. Across the sites, investigators will administer the brief NIH Neuroscience Blueprint Toolbox Cognitive assessment; acquire standardized structural and diffusion images, and collect DNA samples in 1575 children and adolescents who are participants in their ongoing studies. The DNA samples will be shipped to a central Genetics Core for analysis, the imaging data will be uploaded for quality control and computational morphometry by the Imaging Core, and other data will be uploaded to the Coordinating Core, where an aggregate database of demographic, behavioral, imaging, and genomics deliverables will be compiled from 1400 individuals and maintained for shared access. A large, cross-sectional pediatric dataset would fill a significant gap that currently prevents description of gene and gene-by-age effects on neural architecture in children (i.e., main effects of genetic variation and gene effects on developmental trajectories) that are likely to be relevant to variability in behavioral and neuropsychiatric outcomes. Preliminary results of analyses of large adult cohorts suggest that common genetic variation accounts for substantial variability in brain morphology. The age-span of participants in these studies has made it possible to detect gene-by-age interactions relevant to variability in brain aging. Unfortunately because there are no well-powered studies with data from individuals spanning the childhood and adolescent age range, it is not known whether these neural phenotypes are present in children; and if they are, whether they can be observed early in development or evolve as ongoing remodeling of neural structures proceeds during childhood. This project would address the discrepancy between currently available imaging-genetics data in children of different ages and those available in adults. In addition to providing an informative data resource, the project would create a collaborative hub of investigators prepared to participate in an imaging- genomics adjunct study of the National Children's Study, which is in the early planning stages at this time.
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| AWARD OVERVIEW |
| Award Number |
1RC2DA029475-01 |
Funding Agency |
Department of Health and Human Services |
| Total Award Amount |
$8,950,690 |
Project Location - City |
La Jolla |
| Award Date |
09/30/2009 |
Project Location - State |
CA |
| Project Status |
More than 50% Completed |
Project Location - Zip |
92093-0934
|
| Jobs Reported |
5.58 |
Congressional District |
49 |
| Project Location - Country |
US |
|
|
Recipient Information
(Grants)
| Recipient Information (Grants) |
|
Recipient Name
|
UNIVERSITY OF CALIFORNIA, SAN DIEGO |
| Recipient DUNS Number |
804355790
|
| Recipient Address |
9500 GILMAN DR DEPT 621 |
| Recipient City |
LA JOLLA |
| Recipient State |
California |
| Recipient Zip |
92093-0621 |
| Recipient Congressional District |
49 |
| Recipient Country |
USA |
Required to Report Top 5 Highly Compensated Officials |
No |
Projects and Jobs Information
| Projects and Jobs Information |
| Project Title |
CREATING A PEDIATRIC IMAGING-GENOMICS DATA RESOURCE |
| Project Status |
More than 50% Completed |
| Final Project Report Submitted |
No |
| Project Activities Description |
Colleges, Universities, and Professional Schools |
| Quarterly Activities/Project Description |
The Coordinating Core (CC) continues to manage and develop the PING Portal and process applications for ongoing data analysis by investigators within the consortium. This process has resulted in many improvements including: providing the ability to calculate interaction effects as vertex maps of the cortical surface; improve the Portal statistical reports to provide user-requested effect summaries; improve user control of color and contrast for Portal visualization; provide visualization of actual geometric deformation of aligned brain surfaces in both hemispheres; improve download utilities. The Core also managed regular teleconferences and working group meetings for data analysis, training in Portal use, infrastructure development, and curation of the existing database. CC continues to track data use requests, reports, submissions, and publications and to maintain the PING web interface. The Image Processing Core has received a total of approximately 1400 data sets, and the preliminary data generated from these scans have been uploaded to the PING website for use by all researchers involved in the project. The Image Processing Core continues to refine and improve its analysis tools in order to derive new measures to create a richer data set and maximize the amount of usable data. The Genomics Core has received a total of 1452 saliva samples. DNA has been isolated from all saliva samples and 1440 of them passed QC (total DNA yield >=3 ug). The GC has released the final genomic data set to PING investigators, which includes ancestry estimates, imputations, and genotype data for 1406 PING subjects. A similar data set that will include only subjects with appropriate informed consent will be made publicly available through the PING Coordinating Core.
|
| Jobs Created |
5.58 |
| Description of Jobs Created |
For the prime recipient, ARRA funds were used to support five investigators at 0.80 FTE, five programmers at 2.30 FTE, and 2 research staff at 0.35 FTE. For the subrecipients, ARRA funds were used to support: Cornell ? one PI at 0.12 FTE; one research associate at 0.25 FTE, and one graduate student at 0.50 FTE; Yale ? one PI at 0.18 FTE; Scripps ? one Research Scientist at 0.08 FTE; U of Hawaii ? one postdoctoral researcher at 1.00 FTE.
|
Purchaser Information
(Grants)
| Purchaser Information |
| Contracting Office ID |
Not Reported |
| Contracting Office Name |
Not Available |
| Contracting Office Region |
Not Available |
| TAS Major Program |
75-0908 |
| Award Information |
| Award Date |
09/30/2009 |
| Award Number |
1RC2DA029475-01 |
| Order Number |
|
| Award Type |
Grants |
| Funding Agency ID |
75 |
| Funding Agency Name |
Department of Health and Human Services |
| Funding Office Name |
Not Available |
| Awarding Agency ID |
75 |
| Awarding Agency Name |
Department of Health and Human Services |
| Amount of Award |
$8,950,690 |
| Funds Invoiced/Received |
$8,435,325 |
| Expenditure Amount |
$8,478,911 |
| Infrastructure Expenditure Amount |
$0 |
| Infrastructure Purpose and Rationale |
Not Reported |
| Infrastructure Point of Contact Name |
Not Reported |
| Infrastructure Point of Contact Email |
Not Reported |
| Infrastructure Point of Contact Phone |
Not Reported |
| Infrastructure Point of Contact Address |
Not Reported |
| Infrastructure Point of Contact City |
Not Reported |
| Infrastructure Point of Contact State |
Not Reported |
| Infrastructure Point of Contact Zip |
Not Reported |
Product or Service Information
(Grants)
| Product or Service Information |
| Primary Activity Code |
611310 |
| Activity Description |
Colleges, Universities, and Professional Schools |
| Sub-Awards Information |
| Sub-awards to Organizations |
10 |
| Sub-award Amounts to Organizations |
$4,831,591 |
| Sub-Awards to Individuals |
1 |
| Sub-Award Amounts to Individuals |
$10,000 |
| Number of Sub-awards less than $25,000/award |
0 |
| Amount of Sub-awards less than $25,000/award |
$0 |
| Number of payments to vendors greater than $25,000 |
1 |
| Total Amount of payments to vendors greater than $25,000/award |
$214,467 |
| Number of payments to vendors less than $25,000/award |
28 |
| Total Amount of payments to vendors less than $25,000/award |
$72,716 |
Sub-award 10303998 - HUGO W. MOSER RESEARCH INSTITUTE AT KENNEDY KRIEGER, INC.
| Sub-Award Amount |
$445,323 |
| Sub-Award Date |
01/22/2010 |
| Sub-Awards Disbursed |
$445,322.78 |
| Project Location - City |
Baltimore |
| Project Location - State |
MD |
| Project Location - Zip Code |
21205-1832 |
| Project Location - Congressional District |
07 |
| Sub-Recipient DUNS Number |
155342439
|
| Sub-Recipient Address |
707 N BROADWAY |
| Sub-Recipient City |
BALTIMORE |
| Sub-Recipient State |
Maryland |
| Sub-Recipient Zip Code |
21205-1832 |
| Sub-Recipient Congressional District |
07 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10303682 - MASSACHUSETTS GENERAL HOSPITAL, THE
| Sub-Award Amount |
$521,442 |
| Sub-Award Date |
01/26/2010 |
| Sub-Awards Disbursed |
$521,442.00 |
| Project Location - City |
Boston |
| Project Location - State |
MA |
| Project Location - Zip Code |
02114-2621 |
| Project Location - Congressional District |
08 |
| Sub-Recipient DUNS Number |
073130411
|
| Sub-Recipient Address |
55 FRUIT ST |
| Sub-Recipient City |
BOSTON |
| Sub-Recipient State |
Massachusetts |
| Sub-Recipient Zip Code |
02114-2621 |
| Sub-Recipient Congressional District |
08 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10304445 - SCRIPPS HEALTH
| Sub-Award Amount |
$858,653 |
| Sub-Award Date |
03/01/2010 |
| Sub-Awards Disbursed |
$852,447.00 |
| Project Location - City |
La Jolla |
| Project Location - State |
CA |
| Project Location - Zip Code |
92037-1024 |
| Project Location - Congressional District |
49 |
| Sub-Recipient DUNS Number |
131185241
|
| Sub-Recipient Address |
4275 CAMPUS POINT COURT CP215 |
| Sub-Recipient City |
SAN DIEGO |
| Sub-Recipient State |
California |
| Sub-Recipient Zip Code |
92121-1513 |
| Sub-Recipient Congressional District |
52 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10321292 - THE CHILDRENS HOSPITAL LOS ANGELES
| Sub-Award Amount |
$33,600 |
| Sub-Award Date |
04/04/2012 |
| Sub-Awards Disbursed |
$0.00 |
| Project Location - City |
Los Angles |
| Project Location - State |
CA |
| Project Location - Zip Code |
90027-6062 |
| Project Location - Congressional District |
28 |
| Sub-Recipient DUNS Number |
052277936
|
| Sub-Recipient Address |
4650 W SUNSET BLVD |
| Sub-Recipient City |
LOS ANGELES |
| Sub-Recipient State |
California |
| Sub-Recipient Zip Code |
90027-6062 |
| Sub-Recipient Congressional District |
28 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 81449 - UNIVERSITY OF CALIFORNIA, DAVIS
| Sub-Award Amount |
$435,820 |
| Sub-Award Date |
11/30/2009 |
| Sub-Awards Disbursed |
$362,112.58 |
| Project Location - City |
Davis |
| Project Location - State |
CA |
| Project Location - Zip Code |
95616-5270 |
| Project Location - Congressional District |
03 |
| Sub-Recipient DUNS Number |
047120084
|
| Sub-Recipient Address |
1850 RESEARCH PARK DR, STE 300 |
| Sub-Recipient City |
DAVIS |
| Sub-Recipient State |
California |
| Sub-Recipient Zip Code |
95618-6134 |
| Sub-Recipient Congressional District |
03 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 29006 - UNIVERSITY OF CALIFORNIA, LOS ANGELES
| Sub-Award Amount |
$348,040 |
| Sub-Award Date |
11/30/2009 |
| Sub-Awards Disbursed |
$163,235.37 |
| Project Location - City |
Los Angeles |
| Project Location - State |
CA |
| Project Location - Zip Code |
90095-9000 |
| Project Location - Congressional District |
33 |
| Sub-Recipient DUNS Number |
092530369
|
| Sub-Recipient Address |
11000 KINROSS AVE STE 102 |
| Sub-Recipient City |
LOS ANGELES |
| Sub-Recipient State |
California |
| Sub-Recipient Zip Code |
90095-2000 |
| Sub-Recipient Congressional District |
33 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10304444 - UNIVERSITY OF HAWAII SYSTEMS
| Sub-Award Amount |
$993,579 |
| Sub-Award Date |
02/10/2010 |
| Sub-Awards Disbursed |
$858,747.58 |
| Project Location - City |
Honolulu |
| Project Location - State |
HI |
| Project Location - Zip Code |
96822-2309 |
| Project Location - Congressional District |
01 |
| Sub-Recipient DUNS Number |
965088057
|
| Sub-Recipient Address |
2425 CAMPUS RD SINCLAIR LIBRARY RM 1 |
| Sub-Recipient City |
HONOLULU |
| Sub-Recipient State |
Hawaii |
| Sub-Recipient Zip Code |
96822-2247 |
| Sub-Recipient Congressional District |
01 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10303638 - UNIVERSITY OF MASSACHUSETTS
| Sub-Award Amount |
$304,119 |
| Sub-Award Date |
03/16/2010 |
| Sub-Awards Disbursed |
$287,476.45 |
| Project Location - City |
Worcester |
| Project Location - State |
MA |
| Project Location - Zip Code |
01655-0002 |
| Project Location - Congressional District |
02 |
| Sub-Recipient DUNS Number |
603847393
|
| Sub-Recipient Address |
55 LAKE AVE N |
| Sub-Recipient City |
WORCESTER |
| Sub-Recipient State |
Massachusetts |
| Sub-Recipient Zip Code |
01655-0002 |
| Sub-Recipient Congressional District |
02 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10303637 - WEILL MEDICAL COLLEGE OF CORNELL UNIVERSITY
| Sub-Award Amount |
$412,851 |
| Sub-Award Date |
02/24/2010 |
| Sub-Awards Disbursed |
$288,183.82 |
| Project Location - City |
New York |
| Project Location - State |
NY |
| Project Location - Zip Code |
10065-4805 |
| Project Location - Congressional District |
12 |
| Sub-Recipient DUNS Number |
060217502
|
| Sub-Recipient Address |
1300 YORK AVE |
| Sub-Recipient City |
NEW YORK |
| Sub-Recipient State |
New York |
| Sub-Recipient Zip Code |
10065-4805 |
| Sub-Recipient Congressional District |
12 |
Required To Report Top 5 Highly Compensated Officials |
No |
Sub-award 10303636 - YALE UNIVERSITY
| Sub-Award Amount |
$478,165 |
| Sub-Award Date |
02/17/2010 |
| Sub-Awards Disbursed |
$477,855.82 |
| Project Location - City |
New Haven |
| Project Location - State |
CT |
| Project Location - Zip Code |
06520-8064 |
| Project Location - Congressional District |
03 |
| Sub-Recipient DUNS Number |
043207562
|
| Sub-Recipient Address |
105 WALL ST |
| Sub-Recipient City |
NEW HAVEN |
| Sub-Recipient State |
Connecticut |
| Sub-Recipient Zip Code |
06511-6614 |
| Sub-Recipient Congressional District |
03 |
Required To Report Top 5 Highly Compensated Officials |
No |
ILLUMINA, INC. - Award Number 1RC2DA029475-01 - ILLUMINA, INC.
| Award Number |
1RC2DA029475-01 |
| Sub-Award Number |
N/A |
| Vendor DUNS Number |
033305264 |
| Vendor HQ Zip Code + 4 |
92122 |
| Vendor Name |
ILLUMINA, INC. |
| Product and Service Description |
Bead Chip Analysis kits |
| Payment Amount |
$214,467 |
| Location Information |
| Latitude, Longitude |
32º 52' 21",
-117º 14' 15" |
| Congressional District |
49 |
| Address 1 |
University of California, San Diego |
| Address 2 |
9500 Gilman Drive, Mail Code 0934 |
| City |
La Jolla |
| County |
San Diego |
| State |
CA |
| Zip |
92093-0934 |
|
 |