Grants - AWARD SUMMARY


UNIVERSITY OF CALIFORNIA, DAVIS


Award Description Title: Collaborative Research: Phylogeny, Diversification, and Evolutionary Trajectories in the Terebinthaceae (Anacardiaceae and Burseraceae) Documenting the patterns and understanding the causes of variation in rates of lineage diversification (speciation minus extinction) is a central objective of evolutionary biology. Diversification rates may be influenced both by the origin of intrinsic traitskey innovations, such as morphological, behavioral, or physiological noveltiesand the incidence of extrinsic eventskey opportunities, such as episodes of biogeographic or climatic change. Accordingly, a comprehensive understanding of the causes of differential diversification requires the ability to explore the impact of a diverse array of both intrinsic and extrinsic factors. Attempts to understand Darwins abominable mysterythe staggering radiation of flowering plants have largely focused on the search for intrinsic correlates of diversification, including a few putative key innovations relating to floral morphology, growth form, and fruit type/dispersal mechanism. The role of extrinsic factors in flowering plant diversification has received less attention; however, an important class of abiotic factors pertains to the impact of biogeography on diversification. The terebinth clade represents a perfect case study for elucidating the factors that have influenced angiosperm radiation. This ecologically and economically important groupcomprising the two sister families Anacardiaceae and Burseraceaeincludes ~1500 species that exhibit exceptional ecological diversity, morphological disparity and complex biogeographic history. Rigorous analysis of the factors that influenced the terebinth radiation requires a densely sampled, wellsupported phylogeny and a detailed study of the morphology and biogeography of the species. These criteria will be achieved by the following three goals. Goal 1: Estimating higher-level phylogenetic relationships within the terebinth clade (years 12). We will sample broadly, targeting existing gaps to produce a robust, dated phylogeny of all major lineages in order to revise the classification of the two families. Brooklyn Botanic Garden will sequence molecular data for Anacardiaceae, conduct Euroschinus fieldwork, and coordinate collaborative research. University of California, Berkeley will sequence molecular data for Burseraceae and conduct Protieae fieldwork. Goal 2: Estimating species-level phylogenies within four terebinth focal clades (years 12). We will target four terebinth lineages for detailed phylogenetic study: Commiphora and Protieae in the Burseraceae, and Euroschinus and Abrahamia-Baronia in the Anacardiaceae. The New York Botanical Garden will collect morphological data and will conduct fieldwork for Protieae and Euroschinus, respectively. George Mason University, will sequence molecular data for Burseraceae and will gather data for the Commiphora evolutionary ecology studies. Goal 3: Exploring the impact of key historical events on diversification of the four focal clades (years 34). We will adopt a rigorous phylogenetic approach to explore the impact of morphological innovation, habitat specialization, and island colonization in the four focal clades. University of California, Davis will perform analyses to estimate phylogenies for the terebinth clade and the focal groups based on the newly sequenced data, and will perform the necessary analyses to investigate patterns of diversification in these focal clades. This project will provide much-needed clarification of relationships (and classification) within this important groups of flowering plants and greatly advance our understanding of the tremendous radiation of flowering plants.

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AWARD OVERVIEW

AWARD OVERVIEW
Award Number 0919529 Funding Agency National Science Foundation
Total Award Amount $57,723 Project Location - City Davis
Award Date 06/22/2009 Project Location - State CA
Project Status More than 50% Completed Project Location - Zip 95616-5270
Jobs Reported 0.00 Congressional District 03
Project Location - Country US

Recipient Information (Grants)

Recipient Information (Grants)
Recipient Name UNIVERSITY OF CALIFORNIA, DAVIS
Recipient DUNS Number 047120084
Recipient Address 1850 RESEARCH PARK DR, STE 300
Recipient City DAVIS
Recipient State California
Recipient Zip 95618-6134
Recipient Congressional District 03
Recipient Country USA
Required to Report Top 5
Highly Compensated Officials
No

Projects and Jobs Information

Projects and Jobs Information
Project Title Collaborative Research: Phylogeny, Diversification, and Evolutionary Trajectories in the
Project Status More than 50% Completed
Final Project Report Submitted No
Project Activities Description Universities
Quarterly Activities/Project Description As described in the original proposal, the schedule for this collaborative project included two main phases: years 13 of the award (20092011) focused on collecting specimens and generating sequence data by my empirical collaborators. In the second phase of the project, during years 34 of the award (20112012), I would develop and implement the necessary statistical methods and perform analysis of the data (generated in the first phase of the award). Work on the second phase of the award was scheduled to take place in two intensive periodsduring the summers of 2011 and 2012. As originally scheduled, the second intensive methodological period of the project (June 15 2012-August 15, 1012) was recently completed. During this period, I developed additional statistical methods focused on extending the methods developed and implemented first summer. Work this past summer focused on extending phylogenetic statistical methods to accommodate arbitrarily complex patterns of variation in genomic sequence data using a hierarchical Dirichlet process prior model (HDPP). This method was implemented in the program HieDRA (Hierarchical Dirichlet Rate Accommodation), and has been written up for publication. The secondary goal for this summer was to apply these new methods to estimate the phylogeny of the terebinth species, specifically the large-scale phylogeny with estimated divergence times and analyses of patterns of character evolution and rates of lineage diversification. These sequence data have only recently become available, such that data analysis will continue during the fall of 2012 and early 2013. The goal will be to complete these analyses and submit the corresponding projects for publication in early-mid 2013. Because of the delay in starting the data-analysis phase of the project, I have requested a no-cost extension (for 12 months), so that all of the originally scheduled work can be completed prior to submitting the final report.
Jobs Created 0.00
Description of Jobs Created This award provided summer salary to support research on this project.


Purchaser Information (Grants)

Purchaser Information
Contracting Office ID Not Reported
Contracting Office Name Not Available
Contracting Office Region Not Available
TAS Major Program 49-0101

Award Information

Award Information
Award Date 06/22/2009
Award Number 0919529
Order Number
Award Type Grants
Funding Agency ID 49
Funding Agency Name National Science Foundation
Funding Office Name Not Available
Awarding Agency ID 49
Awarding Agency Name National Science Foundation
Amount of Award $57,723
Funds Invoiced/Received $56,846
Expenditure Amount $56,846
Infrastructure Expenditure Amount $0
Infrastructure Purpose and Rationale Not Reported
Infrastructure Point of Contact Name Not Reported
Infrastructure Point of Contact Email Not Reported
Infrastructure Point of Contact Phone Not Reported
Infrastructure Point of Contact Address Not Reported
Infrastructure Point of Contact City Not Reported
Infrastructure Point of Contact State Not Reported
Infrastructure Point of Contact Zip Not Reported

Product or Service Information (Grants)

Product or Service Information
Primary Activity Code B43 - NTEE
Activity Description Universities

Sub-Awards Information

Sub-Awards Information
Sub-awards to Organizations 0
Sub-award Amounts to Organizations $0
Sub-Awards to Individuals 0
Sub-Award Amounts to Individuals $0
Number of Sub-awards less than $25,000/award 0
Amount of Sub-awards less than $25,000/award $0
Number of payments to vendors greater than $25,000 0
Total Amount of payments to vendors greater than $25,000/award $0
Number of payments to vendors less than $25,000/award 0
Total Amount of payments to vendors less than $25,000/award $0







Project Location Detail

Location Information
Latitude, Longitude 38º 32' 26", -121º 44' 50"
Congressional District 03
Address 1 2320 Storer Hall
Address 2 One Shields Ave, University of California
City Davis
County Yolo
State CA
Zip 95616-5270
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