UNIVERSITY OF CALIFORNIA, DAVIS
Award Description
Title: Collaborative Research: Phylogeny, Diversification, and Evolutionary Trajectories in the
Terebinthaceae (Anacardiaceae and Burseraceae)
Documenting the patterns and understanding the causes of variation in rates of lineage diversification
(speciation minus extinction) is a central objective of evolutionary biology. Diversification rates may be
influenced both by the origin of intrinsic traitskey innovations, such as morphological, behavioral, or
physiological noveltiesand the incidence of extrinsic eventskey opportunities, such as episodes of
biogeographic or climatic change. Accordingly, a comprehensive understanding of the causes of
differential diversification requires the ability to explore the impact of a diverse array of both intrinsic and
extrinsic factors.
Attempts to understand Darwins abominable mysterythe staggering radiation of flowering plants
have largely focused on the search for intrinsic correlates of diversification, including a few putative key
innovations relating to floral morphology, growth form, and fruit type/dispersal mechanism. The role of
extrinsic factors in flowering plant diversification has received less attention; however, an important class
of abiotic factors pertains to the impact of biogeography on diversification.
The terebinth clade represents a perfect case study for elucidating the factors that have influenced
angiosperm radiation. This ecologically and economically important groupcomprising the two sister
families Anacardiaceae and Burseraceaeincludes ~1500 species that exhibit exceptional ecological
diversity, morphological disparity and complex biogeographic history.
Rigorous analysis of the factors that influenced the terebinth radiation requires a densely sampled, wellsupported
phylogeny and a detailed study of the morphology and biogeography of the species. These
criteria will be achieved by the following three goals.
Goal 1: Estimating higher-level phylogenetic relationships within the terebinth clade (years 12). We will
sample broadly, targeting existing gaps to produce a robust, dated phylogeny of all major lineages in
order to revise the classification of the two families. Brooklyn Botanic Garden will sequence
molecular data for Anacardiaceae, conduct Euroschinus fieldwork, and coordinate collaborative research.
University of California, Berkeley will sequence molecular data for Burseraceae and
conduct Protieae fieldwork.
Goal 2: Estimating species-level phylogenies within four terebinth focal clades (years 12). We will target
four terebinth lineages for detailed phylogenetic study: Commiphora and Protieae in the Burseraceae,
and Euroschinus and Abrahamia-Baronia in the Anacardiaceae. The New York
Botanical Garden will collect morphological data and will conduct fieldwork for Protieae and Euroschinus,
respectively. George Mason University, will sequence molecular data for Burseraceae and
will gather data for the Commiphora evolutionary ecology studies.
Goal 3: Exploring the impact of key historical events on diversification of the four focal clades (years 34).
We will adopt a rigorous phylogenetic approach to explore the impact of morphological innovation, habitat
specialization, and island colonization in the four focal clades. University of California,
Davis will perform analyses to estimate phylogenies for the terebinth clade and the focal groups based on
the newly sequenced data, and will perform the necessary analyses to investigate patterns of
diversification in these focal clades.
This project will provide much-needed clarification of relationships (and classification) within this important
groups of flowering plants and greatly advance our understanding of the tremendous radiation of
flowering plants.
Choose a quarter and click "Go."
| AWARD OVERVIEW |
| Award Number |
0919529 |
Funding Agency |
National Science Foundation |
| Total Award Amount |
$57,723 |
Project Location - City |
Davis |
| Award Date |
06/22/2009 |
Project Location - State |
CA |
| Project Status |
More than 50% Completed |
Project Location - Zip |
95616-5270
|
| Jobs Reported |
0.00 |
Congressional District |
03 |
| Project Location - Country |
US |
|
|
Recipient Information
(Grants)
| Recipient Information (Grants) |
|
Recipient Name
|
UNIVERSITY OF CALIFORNIA, DAVIS |
| Recipient DUNS Number |
047120084
|
| Recipient Address |
1850 RESEARCH PARK DR, STE 300 |
| Recipient City |
DAVIS |
| Recipient State |
California |
| Recipient Zip |
95618-6134 |
| Recipient Congressional District |
03 |
| Recipient Country |
USA |
Required to Report Top 5 Highly Compensated Officials |
No |
Projects and Jobs Information
| Projects and Jobs Information |
| Project Title |
Collaborative Research: Phylogeny, Diversification, and Evolutionary Trajectories in the |
| Project Status |
More than 50% Completed |
| Final Project Report Submitted |
No |
| Project Activities Description |
Universities |
| Quarterly Activities/Project Description |
As described in the original proposal, the schedule for this collaborative project included two main phases: years 13 of the award (20092011) focused on collecting specimens and generating sequence data by my empirical collaborators.
In the second phase of the project, during years 34 of the award (20112012), I would develop and implement the necessary statistical methods and perform analysis of the data (generated in the first phase of the award). Work on the second phase of the award was scheduled to take place in two intensive periodsduring the summers of 2011 and 2012.
As originally scheduled, the second intensive methodological period of the project (June 15 2012-August 15, 1012) was recently completed. During this period, I developed additional statistical methods focused on extending the methods developed and implemented first summer. Work this past summer focused on extending phylogenetic statistical methods to accommodate arbitrarily complex patterns of variation in genomic sequence data using a hierarchical Dirichlet process prior model (HDPP). This method was implemented in the program HieDRA (Hierarchical Dirichlet Rate Accommodation), and has been written up for publication.
The secondary goal for this summer was to apply these new methods to estimate the phylogeny of the terebinth species, specifically the large-scale phylogeny with estimated divergence times and analyses of patterns of character evolution and rates of lineage diversification. These sequence data have only recently become available, such that data analysis will continue during the fall of 2012 and early 2013. The goal will be to complete these analyses and submit the corresponding projects for publication in early-mid 2013.
Because of the delay in starting the data-analysis phase of the project, I have requested a no-cost extension (for 12 months), so that all of the originally scheduled work can be completed prior to submitting the final report. |
| Jobs Created |
0.00 |
| Description of Jobs Created |
This award provided summer salary to support research on this project. |
Purchaser Information
(Grants)
| Purchaser Information |
| Contracting Office ID |
Not Reported |
| Contracting Office Name |
Not Available |
| Contracting Office Region |
Not Available |
| TAS Major Program |
49-0101 |
| Award Information |
| Award Date |
06/22/2009 |
| Award Number |
0919529 |
| Order Number |
|
| Award Type |
Grants |
| Funding Agency ID |
49 |
| Funding Agency Name |
National Science Foundation |
| Funding Office Name |
Not Available |
| Awarding Agency ID |
49 |
| Awarding Agency Name |
National Science Foundation |
| Amount of Award |
$57,723 |
| Funds Invoiced/Received |
$56,846 |
| Expenditure Amount |
$56,846 |
| Infrastructure Expenditure Amount |
$0 |
| Infrastructure Purpose and Rationale |
Not Reported |
| Infrastructure Point of Contact Name |
Not Reported |
| Infrastructure Point of Contact Email |
Not Reported |
| Infrastructure Point of Contact Phone |
Not Reported |
| Infrastructure Point of Contact Address |
Not Reported |
| Infrastructure Point of Contact City |
Not Reported |
| Infrastructure Point of Contact State |
Not Reported |
| Infrastructure Point of Contact Zip |
Not Reported |
Product or Service Information
(Grants)
| Product or Service Information |
| Primary Activity Code |
B43 - NTEE |
| Activity Description |
Universities |
| Sub-Awards Information |
| Sub-awards to Organizations |
0 |
| Sub-award Amounts to Organizations |
$0 |
| Sub-Awards to Individuals |
0 |
| Sub-Award Amounts to Individuals |
$0 |
| Number of Sub-awards less than $25,000/award |
0 |
| Amount of Sub-awards less than $25,000/award |
$0 |
| Number of payments to vendors greater than $25,000 |
0 |
| Total Amount of payments to vendors greater than $25,000/award |
$0 |
| Number of payments to vendors less than $25,000/award |
0 |
| Total Amount of payments to vendors less than $25,000/award |
$0 |
| Location Information |
| Latitude, Longitude |
38º 32' 26",
-121º 44' 50" |
| Congressional District |
03 |
| Address 1 |
2320 Storer Hall |
| Address 2 |
One Shields Ave, University of California |
| City |
Davis |
| County |
Yolo |
| State |
CA |
| Zip |
95616-5270 |
|
 |